Peptide Bioinformatic Tools. Peptide Software.
Peptide Databases (17)Peptide Design Tools Software (6)Peptide Identification Tools (3) |
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| Antigenic Peptide Prediction - http://bio.dfci.harvard.edu/Tools/antigenic.pl Predicting Antigenic Peptides Tool. An antigen prediction tool that follows the Kolaskar and Tongaonkar (1990) method is available from our antigenic site. - [Read more] |
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| Antimicrobial peptide predictor - http://aps.unmc.edu/AP/prediction/prediction_main.php input the peptide sequence and will predict possible antimicrobial peptide properties. - [Read more] |
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| EPIMHC - Search for peptides that bind to MHC molecules. - http://bio.dfci.harvard.edu/epimhc/ EPIMHC - Search for peptides that bind to MHC molecules. - [Read more] |
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| HelicalWheel - http://www.hku.hk/bruhk/gcgdoc/helicalwheel.html HelicalWheel plots a peptide sequence as a helical wheel to help you recognize amphiphilic regions. - [Read more] |
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| Improve antimicrobial peptide design - http://aps.unmc.edu/AP/design/design_main.php Improve antimicrobial peptide design tool. - [Read more] |
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| ISOELECTRIC(+) - pH for Peptide - http://www.hku.hk/bruhk/gcgdoc/isoelectric.html Isoelectric plots the charge as a function of pH for any peptide sequence. - [Read more] |
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| Isotopident - http://haven.isb-sib.ch/tools/isotopident/htdocs/ Isotopident is a tool that helps you to estimate the theoretical isotopic distribution of a peptide or protein, a polynucleotide and a chemical compound from its composition (sequence of amino acids expressed in either 1-letter code, sequence of amino aci - [Read more] |
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| Molecular Weight Calculator for Peptides - http://aps.unmc.edu/AP/calinput.php Molecular Weight Calculator for Peptides - [Read more] |
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| MOMENT(+) - http://www.hku.hk/bruhk/gcgdoc/moment.html Moment makes a contour plot of the helical hydrophobic moment of a peptide sequence. - [Read more] |
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| PAWS - http://65.219.84.5/paws.html PAWS is a program provided by Genomic Solutions Inc. as part of the Knexus package. It's acronym stands for Protein Analysis Work Sheet. The program was originally designed to manipulate protein sequences and perform calculations that aid in the in - [Read more] |
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| PEAKS - http://www.bioinformaticssolutions.com/products/peaks/index.php PEAKS is an elegant software solution for peptide sequencing and protein identification from tandem mass spectrometry (MS/MS) data. Demo Download Available. - [Read more] |
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| PepSeq - Online Peptide Sequencing Simulation Software - http://www.pepseq.com/ PepSeq is an online training package designed to demonstrate peptide sequencing techniques to distance education and on-campus biochemistry students at university or college. It covers the concepts of alkaline hydrolyses (composition analysis), enzyma - [Read more] |
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| Peptide Antigen Finder - http://www.proteinlounge.com/pepfinder_home.asp Peptide Antigen Finder. Registration Required. - [Read more] |
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| Peptide Property Calculator - http://www.basic.northwestern.edu/biotools/proteincalc.html Peptide Properties Calculator. Hydropathy Plot for peptides, BLAST for peptides, Extinction Coefficient and Approximate volume of peptides. Center for Biotechnology Adam Chazan. - [Read more] |
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| PEPVAC - Vaccine Design using Promiscuous MHC-I Restricted Peptides. - http://immunax.dfci.harvard.edu/PEPVAC/ PEPVAC is a tool aimed to the development of fully covering multi-epitope vaccines against pathogenic organisms based on genome wide predictions of promiscuous MHCI-restricted epitopes - [Read more] |
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| Protein Peptide Hydrophobicity Plotter - http://www.proteinlounge.com/hydroplotter_home.asp Protein Peptide Hydrophobicity Plotter - [Read more] |
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| RankPep - http://mif.dfci.harvard.edu/Tools/rankpep.html Predicts MHC binding peptides from an input protein based on their similarity to a set of peptides known to bind to a given MHC molecule. Similarity is scored using Position Specific Scoring Matrixes (PSSM) derived from the aligned peptides known to bind - [Read more] |
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| SignalP 3.0 Server - http://www.cbs.dtu.dk/services/SignalP/ SignalP 3.0 server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage - [Read more] |
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| Theoretical isotopic distribution - http://haven.isb-sib.ch/~antezana/stage/htdocs/doc.html sotopident is a tool that helps you to estimate the theoretical isotopic distribution of a peptide or protein, a polynucleotide and a chemical compound from its composition (sequence of amino acids expressed in either 1-letter code, sequence of amino acid - [Read more] |