Peptide Bioinformatic Tools. Peptide Software.

Antigenic Peptide Prediction - http://bio.dfci.harvard.edu/Tools/antigenic.pl

Predicting Antigenic Peptides Tool. An antigen prediction tool that follows the Kolaskar and Tongaonkar (1990) method is available from our antigenic site. - [More Antigenic Peptide Prediction]

Antimicrobial peptide predictor - http://aps.unmc.edu/AP/prediction/prediction_main.php

input the peptide sequence and will predict possible antimicrobial peptide properties. - [More Antimicrobial peptide predictor]

EPIMHC - Search for peptides that bind to MHC molecules. - http://bio.dfci.harvard.edu/epimhc/

EPIMHC - Search for peptides that bind to MHC molecules. - [More EPIMHC - Search for peptides that bind to MHC molecules.]

HelicalWheel - http://www.hku.hk/bruhk/gcgdoc/helicalwheel.html

HelicalWheel plots a peptide sequence as a helical wheel to help you recognize amphiphilic regions. - [More HelicalWheel]

Improve antimicrobial peptide design - http://aps.unmc.edu/AP/design/design_main.php

Improve antimicrobial peptide design tool. - [More Improve antimicrobial peptide design]

ISOELECTRIC(+) - pH for Peptide - http://www.hku.hk/bruhk/gcgdoc/isoelectric.html

Isoelectric plots the charge as a function of pH for any peptide sequence. - [More ISOELECTRIC(+) - pH for Peptide]

Isotopident - http://haven.isb-sib.ch/tools/isotopident/htdocs/

Isotopident is a tool that helps you to estimate the theoretical isotopic distribution of a peptide or protein, a polynucleotide and a chemical compound from its composition (sequence of amino acids expressed in either 1-letter code, sequence of amino aci - [More Isotopident]

Molecular Weight Calculator for Peptides - http://aps.unmc.edu/AP/calinput.php

Molecular Weight Calculator for Peptides - [More Molecular Weight Calculator for Peptides]

MOMENT(+) - http://www.hku.hk/bruhk/gcgdoc/moment.html

Moment makes a contour plot of the helical hydrophobic moment of a peptide sequence. - [More MOMENT(+)]

PAWS - http://65.219.84.5/paws.html

PAWS is a program provided by Genomic Solutions Inc. as part of the Knexus package. It's acronym stands for Protein Analysis Work Sheet. The program was originally designed to manipulate protein sequences and perform calculations that aid in the in - [More PAWS]

PEAKS - http://www.bioinformaticssolutions.com/products/peaks/index.php

PEAKS is an elegant software solution for peptide sequencing and protein identification from tandem mass spectrometry (MS/MS) data. Demo Download Available. - [More PEAKS]

PepSeq - Online Peptide Sequencing Simulation Software - http://www.pepseq.com/

PepSeq is an online training package designed to demonstrate peptide sequencing techniques to distance education and on-campus biochemistry students at university or college. It covers the concepts of alkaline hydrolyses (composition analysis), enzyma - [More PepSeq - Online Peptide Sequencing Simulation Software]

Peptide Antigen Finder - http://www.proteinlounge.com/pepfinder_home.asp

Peptide Antigen Finder. Registration Required. - [More Peptide Antigen Finder]

Peptide Property Calculator - http://www.basic.northwestern.edu/biotools/proteincalc.html

Peptide Properties Calculator. Hydropathy Plot for peptides, BLAST for peptides, Extinction Coefficient and Approximate volume of peptides. Center for Biotechnology Adam Chazan. - [More Peptide Property Calculator]

PEPVAC - Vaccine Design using Promiscuous MHC-I Restricted Peptides. - http://immunax.dfci.harvard.edu/PEPVAC/

PEPVAC is a tool aimed to the development of fully covering multi-epitope vaccines against pathogenic organisms based on genome wide predictions of promiscuous MHCI-restricted epitopes - [More PEPVAC - Vaccine Design using Promiscuous MHC-I Restricted Peptides.]

Protein Peptide Hydrophobicity Plotter - http://www.proteinlounge.com/hydroplotter_home.asp

Protein Peptide Hydrophobicity Plotter - [More Protein Peptide Hydrophobicity Plotter]

RankPep - http://mif.dfci.harvard.edu/Tools/rankpep.html

Predicts MHC binding peptides from an input protein based on their similarity to a set of peptides known to bind to a given MHC molecule. Similarity is scored using Position Specific Scoring Matrixes (PSSM) derived from the aligned peptides known to bind - [More RankPep]

SignalP 3.0 Server - http://www.cbs.dtu.dk/services/SignalP/

SignalP 3.0 server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage - [More SignalP 3.0 Server]

Theoretical isotopic distribution - http://haven.isb-sib.ch/~antezana/stage/htdocs/doc.html

sotopident is a tool that helps you to estimate the theoretical isotopic distribution of a peptide or protein, a polynucleotide and a chemical compound from its composition (sequence of amino acids expressed in either 1-letter code, sequence of amino acid - [More Theoretical isotopic distribution]